Publications

2016 (13)

  1. Ballandras-Colas A, Brown M, Cook NJ, Dewdney TG, Demeler B, Cherepanov P, Lyumkis D, Engelman AN. Cryo-EM reveals a novel octameric integrase structure for betaretroviral intasome function. Nature. 2016;530(7590):358-61. PMCID: 4908968. Pubmed
  2. Gui L, Ebner JL, Mileant A, Williams JA, Lee KK. Visualization and sequencing of membrane remodeling leading to influenza virus fusion. J Virol. 2016. PMCID: In Process. Pubmed
  3. Kuruganti S, Miersch S, Deshpande A, Speir JA, Harris BD, Schriewer JM, Buller RM, Sidhu SS, Walter MR. Cytokine Activation by Antibody Fragments Targeted to Cytokine-Receptor Signaling Complexes. J Biol Chem. 2016;291(1):447-61. PMCID: 4697184. Pubmed
  4. Razinkov I, Dandey VP, Wei H, Zhang Z, Melnekoff D, Rice WJ, Wigge C, Potter CS, Carragher B. A new method for vitrifying samples for cryoEM. 2016; J Struct Biol. 195(2):190-198.  PMCID: In Process. Pubmed
  5. Short JR, Speir JA, Gopal R, Pankratz LM, Lanman J, Schneemann A. Role of Mitochondrial Membrane Spherules in Flock House Virus Replication. J Virol. 2016;90(7):3676-83. PMCID: 4794695. Pubmed
  6. Tan YZ, Cheng A, Potter CS, Carragher B. Automated data collection in single particle electron microscopy. Microscopy (Oxf). 2016;65(1):43-56. PMCID: 4749047. Pubmed
  7. Cheng A, Tan YZ, Dandey VP, Potter CS, Carragher B. Strategies for Automated CryoEM Data Collection Using Direct Detectors. Methods Enzymol. 2016;579:87-102. Pubmed
  8. Verba KA, Wang RY, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA. Atomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase. Science. 2016;352(6293):1542-7. PMCID: In Process.  Pubmed
  9. Walls AC, Tortorici MA, Bosch BJ, Frenz B, Rottier PJ, DiMaio F, Rey FA, Veesler D. Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer. Nature. 2016;531(7592):114-7. PMCID: 4749047. Pubmed
  10. Yap ML, Klose T, Arisaka F, Speir JA, Veesler D, Fokine A, Rossmann MG. Role of bacteriophage T4 baseplate in regulating assembly and infection. Proc Natl Acad Sci U S A. 2016;113(10):2654-9. PMCID: 4791028. Pubmed
  11. Zhao H, Speir JA, Matsui T, Lin Z, Liang L, Lynn AY, Varnado B, Weiss TM, Tang L. Structure of a Bacterial Virus DNA-Injection Protein Complex Reveals a Decameric Assembly with a Constricted Molecular Channel. PLoS One. 2016;11(2):e0149337. PMCID: 4755594.  Pubmed
  12. Severin C, Terrell JR, Zengel JR, Cox R, Plemper RK, He B, Luo M. Releasing the genomic RNA sequestered in the mumps virus nucleocapsid. J Virol. 2016. Pubmed.
  13. Davis JH, Tan YZ, Carragher B, Potter CS, Lyumkis D, Willamson JR. Modular Assembly of the Bacterial Large Ribosomal Subunit, Cell,  Accepted.

2015 (21)

  1. Campbell MG, Veesler D, Cheng A, Potter CS, Carragher B. 2.8 A resolution reconstruction of the Thermoplasma acidophilum 20S proteasome using cryo-electron microscopy. Elife. 2015;4. PMCID: 4391500. Pubmed
  2. Carragher B, Potter CS. Recent advances in new technologies and applications for molecular TEM. J Struct Biol. 2015;192(2):145. Not Peer Reviewed. Pubmed
  3. Cheng A, Henderson R, Mastronarde D, Ludtke SJ, Schoenmakers RH, Short J, Marabini R, Dallakyan S, Agard D, Winn M. MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography. J Struct Biol. 2015;192(2):146-50. PMCID: 4642651. Pubmed
  4. Derking R, Ozorowski G, Sliepen K, Yasmeen A, Cupo A, Torres JL, Julien JP, Lee JH, van Montfort T, de Taeye SW, Connors M, Burton DR, Wilson IA, Klasse PJ, Ward AB, Moore JP, Sanders RW. Comprehensive Antigenic Map of a Cleaved Soluble HIV-1 Envelope Trimer. PLoS Pathog. 2015;11(3):e1004767. PMCID: 4373910. Pubmed
  5. Flyak AI, Ilinykh PA, Murin CD, Garron T, Shen X, Fusco ML, Hashiguchi T, Bornholdt ZA, Slaughter JC, Sapparapu G, Klages C, Ksiazek TG, Ward AB, Saphire EO, Bukreyev A, Crowe JE, Jr. Mechanism of human antibody-mediated neutralization of marburg virus. Cell. 2015;160(5):893-903. PMCID: 4344968. Pubmed
  6. Garnham CP, Vemu A, Wilson-Kubalek EM, Yu I, Szyk A, Lander GC, Milligan RA, Roll-Mecak A. Multivalent Microtubule Recognition by Tubulin Tyrosine Ligase-like Family Glutamylases. Cell. 2015;161(5):1112-23. PMCID: 4465277. Pubmed
  7. Grant T, Grigorieff N. Measuring the optimal exposure for single particle cryo-EM using a 2.6 A reconstruction of rotavirus VP6. Elife. 2015;4:e06980. PMCID: 4471936. Pubmed
  8. Guenaga J, de Val N, Tran K, Feng Y, Satchwell K, Ward AB, Wyatt RT. Well-Ordered Trimeric HIV-1 Subtype B and C Soluble Spike Mimetics Generated by Negative Selection Display Native-like Properties. PLoS Pathog. 2015;11(1):e1004570. PMCID: 4287557. Pubmed
  9. Kang Y, Zhou XE, Gao X, He Y, Liu W, Ishchenko A, Barty A, White TA, Yefanov O, Han GW, Xu Q, de Waal PW, Ke J, Tan MH, Zhang C, Moeller A, West GM, Pascal BD, Van Eps N, Caro LN, Vishnivetskiy SA, Lee RJ, Suino-Powell KM, Gu X, Pal K, Ma J, Zhi X, Boutet S, Williams GJ, Messerschmidt M, Gati C, Zatsepin NA, Wang D, James D, Basu S, Roy-Chowdhury S, Conrad CE, Coe J, Liu H, Lisova S, Kupitz C, Grotjohann I, Fromme R, Jiang Y, Tan M, Yang H, Li J, Wang M, Zheng Z, Li D, Howe N, Zhao Y, Standfuss J, Diederichs K, Dong Y, Potter CS, Carragher B, Caffrey M, Jiang H, Chapman HN, Spence JC, Fromme P, Weierstall U, Ernst OP, Katritch V, Gurevich VV, Griffin PR, Hubbell WL, Stevens RC, Cherezov V, Melcher K, Xu HE. Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser. Nature. 2015;523(7562):561-7. PMCID: 4521999. Pubmed
  10. Lee JH, Leaman DP, Kim AS, Torrents de la Pena A, Sliepen K, Yasmeen A, Derking R, Ramos A, de Taeye SW, Ozorowski G, Klein F, Burton DR, Nussenzweig MC, Poignard P, Moore JP, Klasse PJ, Sanders RW, Zwick MB, Wilson IA, Ward AB. Antibodies to a conformational epitope on gp41 neutralize HIV-1 by destabilizing the Env spike. Nature communications. 2015;6:8167. PMCID: 4586043. Pubmed
  11. Leung JH, Schurig-Briccio LA, Yamaguchi M, Moeller A, Speir JA, Gennis RB, Stout CD. Structural biology. Division of labor in transhydrogenase by alternating proton translocation and hydride transfer. Science. 2015;347(6218):178-81. PMCID: 4479213. Pubmed
  12. Majzoub RN, Ewert KK, Jacovetty EL, Carragher B, Potter CS, Li Y, Safinya CR. Patterned Threadlike Micelles and DNA-Tethered Nanoparticles: A Structural Study of PEGylated Cationic Liposome-DNA Assemblies. Langmuir. 2015;31(25):7073-83. PMCID: 4554524. Pubmed
  13. Marabini R, Carragher B, Chen S, Chen J, Cheng A, Downing KH, Frank J, Grassucci RA, Bernard Heymann J, Jiang W, Jonic S, Liao HY, Ludtke SJ, Patwari S, Piotrowski AL, Quintana A, Sorzano CO, Stahlberg H, Vargas J, Voss NR, Chiu W, Carazo JM. CTF Challenge: Result summary. J Struct Biol. 2015;190(3):348-59. PMCID: 4672951. Pubmed
  14. McCullough J, Clippinger AK, Talledge N, Skowyra ML, Saunders MG, Naismith TV, Colf LA, Afonine P, Arthur C, Sundquist WI, Hanson PI, Frost A. Structure and membrane remodeling activity of ESCRT-III helical polymers. Science. 2015;350(6267):1548-51. PMCID: 4684769. Pubmed
  15. McNulty R, Lokareddy RK, Roy A, Yang Y, Lander GC, Heck AJ, Johnson JE, Cingolani G. Architecture of the Complex Formed by Large and Small Terminase Subunits from Bacteriophage P22. J Mol Biol. 2015;427(20):3285-99. PMCID: 4587339. Pubmed
  16. Moeller A, Lee SC, Tao H, Speir JA, Chang G, Urbatsch IL, Potter CS, Carragher B, Zhang Q. Distinct Conformational Spectrum of Homologous Multidrug ABC Transporters. Structure. 2015;23(3):450-60. PMCID: 4351144. Pubmed
  17. Mulligan SK, Speir JA, Razinkov I, Cheng A, Crum J, Jain T, Duggan E, Liu E, Nolan JP, Carragher B, Potter CS. Multiplexed TEM Specimen Preparation and Analysis of Plasmonic Nanoparticles. Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 2015;21(4):1017-25. PMCID: 4701052. Pubmed
  18. Pugach P, Ozorowski G, Cupo A, Ringe R, Yasmeen A, de Val N, Derking R, Kim HJ, Korzun J, Golabek M, de Los Reyes K, Ketas TJ, Julien JP, Burton DR, Wilson IA, Sanders RW, Klasse PJ, Ward AB, Moore JP. A native-like SOSIP.664 trimer based on an HIV-1 subtype B env gene. J Virol. 2015;89(6):3380-95. PMCID: 4337520. Pubmed
  19. Sheth LK, Piotrowski AL, Voss NR. Visualization and quality assessment of the contrast transfer function estimation. J Struct Biol. 2015;192(2):222-34. PMCID: In process. Pubmed
  20. Yang L, Yang D, de Graaf C, Moeller A, West GM, Dharmarajan V, Wang C, Siu FY, Song G, Reedtz-Runge S, Pascal BD, Wu B, Potter CS, Zhou H, Griffin PR, Carragher B, Yang H, Wang MW, Stevens RC, Jiang H. Conformational states of the full-length glucagon receptor. Nature communications. 2015;6:7859. PMCID: 4532856. Pubmed
  21. Ye Q, Rosenberg SC, Moeller A, Speir JA, Su TY, Corbett KD. TRIP13 is a protein-remodeling AAA+ ATPase that catalyzes MAD2 conformation switching. Elife. 2015;4. PMCID: 4439613. Pubmed

2014 (23)

  1. Bhabha G, Cheng HC, Zhang N, Moeller A, Liao M, Speir JA, Cheng Y, Vale RD. Allosteric communication in the Dynein motor domain. Cell. 2014;159(4):857-68. PMCID: 4269335. Pubmed
  2. Blattner C, Lee JH, Sliepen K, Derking R, Falkowska E, de la Pena AT, Cupo A, Julien JP, van Gils M, Lee PS, Peng W, Paulson JC, Poignard P, Burton DR, Moore JP, Sanders RW, Wilson IA, Ward AB. Structural delineation of a quaternary, cleavage-dependent epitope at the gp41-gp120 interface on intact HIV-1 Env trimers. Immunity. 2014;40(5):669-80. PMCID: 4057017. Pubmed
  3. Butan C, Filman DJ, Hogle JM. Cryo-electron microscopy reconstruction shows poliovirus 135S particles poised for membrane interaction and RNA release. J Virol. 2014;88(3):1758-70. PMCID: 3911577. Pubmed
  4. Campbell MG, Kearney BM, Cheng A, Potter CS, Johnson JE, Carragher B, Veesler D. Near-atomic resolution reconstructions using a mid-range electron microscope operated at 200 kV. J Struct Biol. 2014;188(2):183-7. PMCID: 4497823. Pubmed
  5. Campbell MG, Smith BC, Potter CS, Carragher B, Marletta MA. Molecular architecture of mammalian nitric oxide synthases. Proc Natl Acad Sci U S A. 2014;111(35):E3614-23. PMCID: 4156747. Pubmed
  6. Campbell MG, Underbakke ES, Potter CS, Carragher B, Marletta MA. Single-particle EM reveals the higher-order domain architecture of soluble guanylate cyclase. Proc Natl Acad Sci U S A. 2014;111(8):2960-5. PMCID: 3939929. Pubmed
  7. Friesen RH, Lee PS, Stoop EJ, Hoffman RM, Ekiert DC, Bhabha G, Yu W, Juraszek J, Koudstaal W, Jongeneelen M, Korse HJ, Ophorst C, Brinkman-van der Linden EC, Throsby M, Kwakkenbos MJ, Bakker AQ, Beaumont T, Spits H, Kwaks T, Vogels R, Ward AB, Goudsmit J, Wilson IA. A common solution to group 2 influenza virus neutralization. Proc Natl Acad Sci U S A. 2014;111(1):445-50. PMCID: 3890827. Pubmed
  8. Garces F, Sok D, Kong L, McBride R, Kim HJ, Saye-Francisco KF, Julien JP, Hua Y, Cupo A, Moore JP, Paulson JC, Ward AB, Burton DR, Wilson IA. Structural evolution of glycan recognition by a family of potent HIV antibodies. Cell. 2014;159(1):69-79. PMCID: 4278586. Pubmed
  9. Grover RK, Zhu X, Nieusma T, Jones T, Boero I, MacLeod AS, Mark A, Niessen S, Kim HJ, Kong L, Assad-Garcia N, Kwon K, Chesi M, Smider VV, Salomon DR, Jelinek DF, Kyle RA, Pyles RB, Glass JI, Ward AB, Wilson IA, Lerner RA. A structurally distinct human mycoplasma protein that generically blocks antigen-antibody union. Science. 2014;343(6171):656-61. PMCID: 3987992. Pubmed
  10. Hsia KC, Wilson-Kubalek EM, Dottore A, Hao Q, Tsai KL, Forth S, Shimamoto Y, Milligan RA, Kapoor TM. Reconstitution of the augmin complex provides insights into its architecture and function. Nat Cell Biol. 2014;16(9):852-63. PMCID: 4244909. Pubmed
  11. Liu T, Sae-Ueng U, Li D, Lander GC, Zuo X, Jonsson B, Rau D, Shefer I, Evilevitch A. Solid-to-fluid-like DNA transition in viruses facilitates infection. Proc Natl Acad Sci U S A. 2014;111(41):14675-80. PMCID: 4205597. Pubmed
  12. Lyumkis D, Oliveira Dos Passos D, Tahara EB, Webb K, Bennett EJ, Vinterbo S, Potter CS, Carragher B, Joazeiro CA. Structural basis for translational surveillance by the large ribosomal subunit-associated protein quality control complex. Proc Natl Acad Sci U S A. 2014. PMCID: 4234556. Pubmed
  13. Majzoub RN, Chan CL, Ewert KK, Silva BF, Liang KS, Jacovetty EL, Carragher B, Potter CS, Safinya CR. Uptake and transfection efficiency of PEGylated cationic liposome-DNA complexes with and without RGD-tagging. Biomaterials. 2014;35(18):4996-5005. PMCID: 4032065. Pubmed
  14. Matho MH, de Val N, Miller GM, Brown J, Schlossman A, Meng X, Crotty S, Peters B, Xiang Y, Hsieh-Wilson LC, Ward AB, Zajonc DM. Murine anti-vaccinia virus D8 antibodies target different epitopes and differ in their ability to block D8 binding to CS-E. PLoS Pathog. 2014;10(12):e1004495. PMCID: 4256255. Pubmed
  15. Murin CD, Fusco ML, Bornholdt ZA, Qiu X, Olinger GG, Zeitlin L, Kobinger GP, Ward AB, Saphire EO. Structures of protective antibodies reveal sites of vulnerability on Ebola virus. Proc Natl Acad Sci U S A. 2014;111(48):17182-7. PMCID: 4260551. Pubmed
  16. Murin CD, Julien JP, Sok D, Stanfield RL, Khayat R, Cupo A, Moore JP, Burton DR, Wilson IA, Ward AB. Structure of 2G12 Fab2 in complex with soluble and fully glycosylated HIV-1 Env by negative-stain single-particle electron microscopy. J Virol. 2014;88(17):10177-88. PMCID: 4136306. Pubmed
  17. Nolan JP, Duggan E, Condello D. Optimization of SERS Tag Intensity, Binding Footprint, and Emittance. Bioconjug Chem. 2014. PMCID: 4215889. Pubmed
  18. Parent KN, Erb ML, Cardone G, Nguyen K, Gilcrease EB, Porcek NB, Pogliano J, Baker TS, Casjens SR. OmpA and OmpC are critical host factors for bacteriophage Sf6 entry in Shigella. Mol Microbiol. 2014;92(1):47-60. PMCID: 4034267. Pubmed
  19. Pratt AJ, Shin DS, Merz GE, Rambo RP, Lancaster WA, Dyer KN, Borbat PP, Poole FL, 2nd, Adams MW, Freed JH, Crane BR, Tainer JA, Getzoff ED. Aggregation propensities of superoxide dismutase G93 hotspot mutants mirror ALS clinical phenotypes. Proc Natl Acad Sci U S A. 2014. PMCID: 4217430. Pubmed
  20. Sashital DG, Greeman CA, Lyumkis D, Potter CS, Carragher B, Williamson JR. A combined quantitative mass spectrometry and electron microscopy analysis of ribosomal 30S subunit assembly in E. coli. Elife. 2014;3. PMCID: 4371863. Pubmed
  21. Scharf L, Scheid JF, Lee JH, West AP, Jr., Chen C, Gao H, Gnanapragasam PN, Mares R, Seaman MS, Ward AB, Nussenzweig MC, Bjorkman PJ. Antibody 8ANC195 reveals a site of broad vulnerability on the HIV-1 envelope spike. Cell Rep. 2014;7(3):785-95. PMCID: 4109818. Pubmed
  22. Veesler D, Cupelli K, Burger M, Graber P, Stehle T, Johnson JE. Single-particle EM reveals plasticity of interactions between the adenovirus penton base and integrin alphaVbeta3. Proc Natl Acad Sci U S A. 2014;111(24):8815-9. PMCID: 4066496. Pubmed
  23. Veesler D, Khayat R, Krishnamurthy S, Snijder J, Huang RK, Heck AJ, Anand GS, Johnson JE. Architecture of a dsDNA viral capsid in complex with its maturation protease. Structure. 2014;22(2):230-7. PMCID: 3939775. Pubmed

 

2013 (31)

1. Cheng A. Automation of data acquisition in electron crystallography. Methods Mol Biol. 2013;955:307-12. PMCID Not Peered Reviewed. PubMed
2. Cheng A. Automated grid handling and image acquisition for two-dimensional crystal screening. Methods Mol Biol. 2013;955:297-305. PMCID Not Peered Reviewed. PubMed
3. Cui H, Mim C, Vazquez FX, Lyman E, Unger VM, Voth GA. Understanding the Role of Amphipathic Helices in N-BAR Domain Driven Membrane Remodeling. Biophys J. 2013;104(2):404-11. PMCID PMC3552260. PubMed
4. Gogol EP, Akkaladevi N, Szerszen L, Mukherjee S, Chollet-Hinton L, Katayama H, Pentelute BL, Collier RJ, Fisher MT. Three dimensional structure of the anthrax toxin translocon-lethal factor complex by cryo-electron microscopy. Protein Sci. 2013;22(5):586-94. PMCID PMC3649260. PubMed
5. Hong M, Lee PS, Hoffman RM, Zhu X, Krause JC, Laursen NS, Yoon SI, Song L, Tussey L, Crowe JE, Jr., Ward AB, Wilson IA. Antibody recognition of the pandemic H1N1 Influenza virus hemagglutinin receptor binding site. J Virol. 2013;87(22):12471-80. PMCID PMC3807900. PubMed
6. Julien JP, Cupo A, Sok D, Stanfield RL, Lyumkis D, Deller MC, Klasse PJ, Burton DR, Sanders RW, Moore JP, Ward AB, Wilson IA. Crystal structure of a soluble cleaved HIV-1 envelope trimer. Science. 2013;342(6165):1477-83. PubMed
7. Julien JP, Lee JH, Cupo A, Murin CD, Derking R, Hoffenberg S, Caulfield MJ, King CR, Marozsan AJ, Klasse PJ, Sanders RW, Moore JP, Wilson IA, Ward AB. Asymmetric recognition of the HIV-1 trimer by broadly neutralizing antibody PG9. Proc Natl Acad Sci U S A. 2013;110(11):4351-6. PMCID PMC3600498. PubMed
8. Julien JP, Sok D, Khayat R, Lee JH, Doores KJ, Walker LM, Ramos A, Diwanji DC, Pejchal R, Cupo A, Katpally U, Depetris RS, Stanfield RL, McBride R, Marozsan AJ, Paulson JC, Sanders RW, Moore JP, Burton DR, Poignard P, Ward AB, Wilson IA. Broadly neutralizing antibody PGT121 allosterically modulates CD4 binding via recognition of the HIV-1 gp120 V3 base and multiple surrounding glycans. PLoS Pathog. 2013;9(5):e1003342. PMCID PMC3642082. PubMed
9. Khayat R, Lee JH, Julien JP, Cupo A, Klasse PJ, Sanders RW, Moore JP, Wilson IA, Ward AB. Structural characterization of cleaved, soluble human immunodeficiency virus type-1 envelope glycoprotein trimers. J Virol. 2013. PMCID PMC3754114 [Available on 2014/3/1]. PubMed
10. Klasse PJ, Depetris RS, Pejchal R, Julien JP, Khayat R, Lee JH, Marozsan AJ, Cupo A, Cocco N, Korzun J, Yasmeen A, Ward AB, Wilson IA, Sanders RW, Moore JP. Influences on Trimerization and Aggregation of Soluble, Cleaved HIV-1 SOSIP Envelope Glycoprotein. J Virol. 2013;87(17):9873-85. PMCID PMC3754145. PubMed
11. Kong L, Lee JH, Doores KJ, Murin CD, Julien JP, McBride R, Liu Y, Marozsan A, Cupo A, Klasse PJ, Hoffenberg S, Caulfield M, King CR, Hua Y, Le KM, Khayat R, Deller MC, Clayton T, Tien H, Feizi T, Sanders RW, Paulson JC, Moore JP, Stanfield RL, Burton DR, Ward AB, Wilson IA. Supersite of immune vulnerability on the glycosylated face of HIV-1 envelope glycoprotein gp120. Nat Struct Mol Biol. 2013;20(7):796-803. PMCID PMC3823233. PubMed
12. Lander GC, Johnson JE, Rau DC, Potter CS, Carragher B, Evilevitch A. DNA bending-induced phase transition of encapsidated genome in phage lambda. Nucleic Acids Res. 2013;41(8):4518-24. PMCID PMC3632124. PubMed
13. Lyumkis D, Brilot AF, Theobald DL, Grigorieff N. Likelihood-based classification of cryo-EM images using FREALIGN. J Struct Biol. 2013;183(3):377-88. PMCID PMC3824613. PubMed
14. Lyumkis D, Doamekpor SK, Bengtson MH, Lee JW, Toro TB, Petroski MD, Lima CD, Potter CS, Carragher B, Joazeiro CA. Single-particle EM reveals extensive conformational variability of the Ltn1 E3 ligase. Proc Natl Acad Sci U S A. 2013;110(5):1702-7. PMCID PMC3562785. PubMed
15. Lyumkis D, Julien JP, de Val N, Cupo A, Potter CS, Klasse PJ, Burton DR, Sanders RW, Moore JP, Carragher B, Wilson IA, Ward AB. Cryo-EM structure of a fully glycosylated soluble cleaved HIV-1 envelope trimer. Science. 2013;342(6165):1484-90. PubMed
16. Lyumkis D, Talley H, Stewart A, Shah S, Park Chad K, Tama F, Potter Clinton S, Carragher B, Horton Nancy C. Allosteric Regulation of DNA Cleavage and Sequence-Specificity through Run-On Oligomerization. Structure (London, England : 1993). 2013. PubMed
17. Lyumkis D, Vinterbo S, Potter CS, Carragher B. Optimod – An automated approach for constructing and optimizing initial models for single-particle electron microscopy. J Struct Biol. 2013;184(3):417-26. PubMed
18. Minnihan EC, Ando N, Brignole EJ, Olshansky L, Chittuluru J, Asturias FJ, Drennan CL, Nocera DG, Stubbe J. Generation of a stable, aminotyrosyl radical-induced alpha2beta2 complex of Escherichia coli class Ia ribonucleotide reductase. Proc Natl Acad Sci U S A. 2013;110(10):3835-40. PMCID PMC3593893. PubMed
19. Ringe RP, Sanders RW, Yasmeen A, Kim HJ, Lee JH, Cupo A, Korzun J, Derking R, van Montfort T, Julien JP, Wilson IA, Klasse PJ, Ward AB, Moore JP. Cleavage strongly influences whether soluble HIV-1 envelope glycoprotein trimers adopt a native-like conformation. Proc Natl Acad Sci U S A. 2013;110(45):18256-61. PMCID PMC3831437. PubMed
20. Ruskin RS, Yu Z, Grigorieff N. Quantitative characterization of electron detectors for transmission electron microscopy. J Struct Biol. 2013;184(3):385-93. PMCID PMC3876735. PubMed
21. Sanders RW, Derking R, Cupo A, Julien JP, Yasmeen A, de Val N, Kim HJ, Blattner C, de la Pena AT, Korzun J, Golabek M, de Los Reyes K, Ketas TJ, van Gils MJ, King CR, Wilson IA, Ward AB, Klasse PJ, Moore JP. A Next-Generation Cleaved, Soluble HIV-1 Env Trimer, BG505 SOSIP.664 gp140, Expresses Multiple Epitopes for Broadly Neutralizing but Not Non-Neutralizing Antibodies. PLoS Pathog. 2013;9(9):e1003618. PMCID PMC3777863. PubMed
22. Shigematsu H, Sigworth FJ. Noise models and cryo-EM drift correction with a direct-electron camera. Ultramicroscopy. 2013;131:61-9. PMCID PMC3736808. PubMed
23. Shin JB, Krey JF, Hassan A, Metlagel Z, Tauscher AN, Pagana JM, Sherman NE, Jeffery ED, Spinelli KJ, Zhao H, Wilmarth PA, Choi D, David LL, Auer M, Barr-Gillespie PG. Molecular architecture of the chick vestibular hair bundle. Nat Neurosci. 2013;16(3):365-74. PMCID PMC3581746. PubMed
24. Tao H, Lee SC, Moeller A, Roy RS, Siu FY, Zimmermann J, Stevens RC, Potter CS, Carragher B, Zhang Q. Engineered nanostructured [beta]-sheet peptides protect membrane proteins. Nat Meth. 2013;10(8):759-61. PMCID PMC3753066. PubMed
25. Thornburg NJ, Nannemann DP, Blum DL, Belser JA, Tumpey TM, Deshpande S, Fritz GA, Sapparapu G, Krause JC, Lee JH, Ward AB, Lee DE, Li S, Winarski KL, Spiller BW, Meiler J, Crowe JE, Jr. Human antibodies that neutralize respiratory droplet transmissible H5N1 influenza viruses. J Clin Invest. 2013;123(10):4405-9. PMCID PMC3784541. PubMed
26. Tsai KL, Sato S, Tomomori-Sato C, Conaway RC, Conaway JW, Asturias FJ. A conserved Mediator-CDK8 kinase module association regulates Mediator-RNA polymerase II interaction. Nat Struct Mol Biol. 2013;20(5):611-9. PMCID PMC3648612. PubMed
27. Veesler D, Campbell MG, Cheng A, Fu CY, Murez Z, Johnson JE, Potter CS, Carragher B. Maximizing the potential of electron cryomicroscopy data collected using direct detectors. J Struct Biol. 2013;184(2):193-202. PMCID PMC3832241. PubMed
28. Veesler D, Khayat R, Krishnamurthy S, Snijder J, Huang RK, Heck AJ, Anand GS, Johnson JE. Architecture of a dsDNA Viral Capsid in Complex with Its Maturation Protease. Structure. 2013. PubMed
29. Veesler D, Ng TS, Sendamarai AK, Eilers BJ, Lawrence CM, Lok SM, Young MJ, Johnson JE, Fu CY. Atomic structure of the 75 MDa extremophile Sulfolobus turreted icosahedral virus determined by CryoEM and X-ray crystallography. Proc Natl Acad Sci U S A. 2013;110(14):5504-9. PMCID PMC3619359. PubMed
30. Wang Y, Jett SD, Crum J, Schanze KS, Chi EY, Whitten DG. Understanding the dark and light-enhanced bactericidal action of cationic conjugated polyelectrolytes and oligomers. Langmuir. 2013;29(2):781-92. PMCID PMC3884591. PubMed
31. Yoshioka C, Lyumkis D, Carragher B, Potter CS. Maskiton: Interactive, web-based classification of single-particle electron microscopy images. J Struct Biol. 2013;182(2):155-63. PMCID PMC3645979. PubMed

2012 (26)

1. Aye Y, Brignole EJ, Long MJ, Chittuluru J, Drennan CL, Asturias FJ, Stubbe J. Clofarabine targets the large subunit (alpha) of human ribonucleotide reductase in live cells by assembly into persistent hexamers. Chem Biol. 2012;19(7):799-805. PMCID PMC3408589. PubMed
2. Baudoux AC, Hendrix RW, Lander GC, Bailly X, Podell S, Paillard C, Johnson JE, Potter CS, Carragher B, Azam F. Genomic and functional analysis of Vibrio phage SIO-2 reveals novel insights into ecology and evolution of marine siphoviruses. Environ Microbiol. 2012;14(8):2071-86. PMCID PMC3338904. PubMed
3. Brilot AF, Chen JZ, Cheng A, Pan J, Harrison SC, Potter CS, Carragher B, Henderson R, Grigorieff N. Beam-induced motion of vitrified specimen on holey carbon film. J Struct Biol. 2012;177(3):630-7. PMCID PMC3322646. PubMed
4. Campbell MG, Cheng A, Brilot AF, Moeller A, Lyumkis D, Veesler D, Pan J, Harrison SC, Potter CS, Carragher B, Grigorieff N. Movies of ice-embedded particles enhance resolution in electron cryo-microscopy. Structure. 2012;20(11):1823-8. PMCID PMC3510009. PubMed
5. Clare DK, Vasishtan D, Stagg S, Quispe J, Farr GW, Topf M, Horwich AL, Saibil HR. ATP-triggered conformational changes delineate substrate-binding and -folding mechanics of the GroEL chaperonin. Cell. 2012;149(1):113-23. PMCID PMC3326522. PubMed
6. Depetris RS, Julien JP, Khayat R, Lee JH, Pejchal R, Katpally U, Cocco N, Kachare M, Massi E, David KB, Cupo A, Marozsan AJ, Olson WC, Ward AB, Wilson IA, Sanders RW, Moore JP. Partial enzymatic deglycosylation preserves the structure of cleaved recombinant HIV-1 envelope glycoprotein trimers. J Biol Chem. 2012;287(29):24239-54. PMCID PMC3397850. PubMed
7. Dreyfus C, Laursen NS, Kwaks T, Zuijdgeest D, Khayat R, Ekiert DC, Lee JH, Metlagel Z, Bujny MV, Jongeneelen M, van der Vlugt R, Lamrani M, Korse HJ, Geelen E, Sahin O, Sieuwerts M, Brakenhoff JP, Vogels R, Li OT, Poon LL, Peiris M, Koudstaal W, Ward AB, Wilson IA, Goudsmit J, Friesen RH. Highly conserved protective epitopes on influenza B viruses. Science. 2012;337(6100):1343-8. PMCID PMC3538841. PubMed
8. Ekiert DC, Kashyap AK, Steel J, Rubrum A, Bhabha G, Khayat R, Lee JH, Dillon MA, O’Neil RE, Faynboym AM, Horowitz M, Horowitz L, Ward AB, Palese P, Webby R, Lerner RA, Bhatt RR, Wilson IA. Cross-neutralization of influenza A viruses mediated by a single antibody loop. Nature. 2012;489(7417):526-32. PMCID PMC3538848. PubMed
9. Fiedler JD, Higginson C, Hovlid ML, Kislukhin AA, Castillejos A, Manzenrieder F, Campbell MG, Voss NR, Potter CS, Carragher B, Finn MG. Engineered mutations change the structure and stability of a virus-like particle. Biomacromolecules. 2012;13(8):2339-48. PMCID PMC3432585. PubMed
10. Gibbons BJ, Brignole EJ, Azubel M, Murakami K, Voss NR, Bushnell DA, Asturias FJ, Kornberg RD. Subunit architecture of general transcription factor TFIIH. Proc Natl Acad Sci U S A. 2012;109(6):1949-54. PMCID PMC3277522. PubMed
11. Jain T, Sheehan P, Crum J, Carragher B, Potter CS. Spotiton: a prototype for an integrated inkjet dispense and vitrification system for cryo-TEM. J Struct Biol. 2012;179(1):68-75. PMCID PMC3378829. PubMed
12. Lander GC, Baudoux AC, Azam F, Potter CS, Carragher B, Johnson JE. Capsomer dynamics and stabilization in the T = 12 marine bacteriophage SIO-2 and its procapsid studied by CryoEM. Structure. 2012;20(3):498-503. PMCID PMC3302160. PubMed
13. Lander GC, Estrin E, Matyskiela ME, Bashore C, Nogales E, Martin A. Complete subunit architecture of the proteasome regulatory particle. Nature. 2012;482(7384):186-91. PMCID PMC3285539. PubMed
14. Lau PW, Guiley KZ, De N, Potter CS, Carragher B, MacRae IJ. The molecular architecture of human Dicer. Nat Struct Mol Biol. 2012;19(4):436-40. PMCID PMC3319852. PubMed
15. Lau PW, Potter CS, Carragher B, MacRae IJ. DOLORS: Versatile Strategy for Internal Labeling and Domain Localization in Electron Microscopy. Structure. 2012;20(12):1995-2002. PMCID PMC3535077. PubMed
16. Mim C, Cui H, Gawronski-Salerno JA, Frost A, Lyman E, Voth GA, Unger VM. Structural basis of membrane bending by the N-BAR protein endophilin. Cell. 2012;149(1):137-45. PMCID PMC3319357. PubMed
17. Moeller A, Kirchdoerfer RN, Potter CS, Carragher B, Wilson IA. Organization of the influenza virus replication machinery. Science. 2012;338(6114):1631-4. PMCID PMC3578580. PubMed
18. Moeller A, Zhao C, Fried MG, Wilson-Kubalek EM, Carragher B, Whiteheart SW. Nucleotide-dependent conformational changes in the N-Ethylmaleimide Sensitive Factor (NSF) and their potential role in SNARE complex disassembly. J Struct Biol. 2012;177(2):335-43. PMCID PMC3382979. PubMed
19. Patwardhan A, Carazo JM, Carragher B, Henderson R, Heymann JB, Hill E, Jensen GJ, Lagerstedt I, Lawson CL, Ludtke SJ, Mastronarde D, Moore WJ, Roseman A, Rosenthal P, Sorzano CO, Sanz-Garcia E, Scheres SH, Subramaniam S, Westbrook J, Winn M, Swedlow JR, Kleywegt GJ. Data management challenges in three-dimensional EM. Nat Struct Mol Biol. 2012;19(12):1203-7. PubMed
20. Pratt AJ, Rambo RP, Lau PW, MacRae IJ. Preparation and characterization of the extracellular domain of human Sid-1. PLoS One. 2012;7(4):e33607. PMCID PMC3324469. PubMed
21. Roy A, Bhardwaj A, Datta P, Lander GC, Cingolani G. Small terminase couples viral DNA binding to genome-packaging ATPase activity. Structure. 2012;20(8):1403-13. PMCID PMC3563279. PubMed
22. Scheres SH. A Bayesian view on cryo-EM structure determination. J Mol Biol. 2012;415(2):406-18. PMCID PMC3314964. PubMed
23. Schneemann A, Speir JA, Tan GS, Khayat R, Ekiert DC, Matsuoka Y, Wilson IA. A virus-like particle that elicits cross-reactive antibodies to the conserved stem of influenza virus hemagglutinin. J Virol. 2012;86(21):11686-97. PMCID PMC3486276. PubMed
24. Veesler D, Quispe J, Grigorieff N, Potter CS, Carragher B, Johnson JE. Maturation in action: CryoEM study of a viral capsid caught during expansion. Structure. 2012;20(8):1384-90. PMCID PMC3418467. PubMed
25. Xu Y, Moeller A, Jun SY, Le M, Yoon BY, Kim JS, Lee K, Ha NC. Assembly and channel opening of outer membrane protein in tripartite drug efflux pumps of Gram-negative bacteria. J Biol Chem. 2012;287(15):11740-50. PMCID PMC3320922. PubMed
26. Zimanyi CM, Ando N, Brignole EJ, Asturias FJ, Stubbe J, Drennan CL. Tangled up in knots: structures of inactivated forms of E. coli class Ia ribonucleotide reductase. Structure. 2012;20(8):1374-83. PMCID PMC3459064. PubMed

2011 (23)

1. Ando N, Brignole EJ, Zimanyi CM, Funk MA, Yokoyama K, Asturias FJ, Stubbe J, Drennan CL. Structural interconversions modulate activity of Escherichia coli ribonucleotide reductase. Proc Natl Acad Sci U S A. 2011;108(52):21046-51. PMCID PMC3248520. PubMed
2. Chandramouli P, Hernandez-Lopez R, Wang HW, Leschziner AE. Validation of the orthogonal tilt reconstruction method with a biological test sample. J Struct Biol. 2011;175(1):85-96. PubMed
3. Chappie JS, Mears JA, Fang S, Leonard M, Schmid SL, Milligan RA, Hinshaw JE, Dyda F. A pseudoatomic model of the dynamin polymer identifies a hydrolysis-dependent powerstroke. Cell. 2011;147(1):209-22. PMCID PMC3185303. PubMed
4. Chittuluru JR, Chaban Y, Monnet-Saksouk J, Carrozza MJ, Sapountzi V, Selleck W, Huang J, Utley RT, Cramet M, Allard S, Cai G, Workman JL, Fried MG, Tan S, Cote J, Asturias FJ. Structure and nucleosome interaction of the yeast NuA4 and Piccolo-NuA4 histone acetyltransferase complexes. Nat Struct Mol Biol. 2011;18(11):1196-203. PMCID PMC3210417. PubMed
5. Fisher LS, Ward A, Milligan RA, Unwin N, Potter CS, Carragher B. A helical processing pipeline for EM structure determination of membrane proteins. Methods. 2011;55(4):350-62. PMCID PMC3262078. PubMed
6. Ganser-Pornillos BK, Chandrasekaran V, Pornillos O, Sodroski JG, Sundquist WI, Yeager M. Hexagonal assembly of a restricting TRIM5alpha protein. Proc Natl Acad Sci U S A. 2011;108(2):534-9. PMCID PMC3021009. PubMed
7. Glaeser RM, Typke D, Tiemeijer PC, Pulokas J, Cheng A. Precise beam-tilt alignment and collimation are required to minimize the phase error associated with coma in high-resolution cryo-EM. J Struct Biol. 2011;174(1):1-10. PMCID PMC3056894. PubMed
8. Huang RK, Khayat R, Lee KK, Gertsman I, Duda RL, Hendrix RW, Johnson JE. The Prohead-I Structure of Bacteriophage HK97: Implications for Scaffold-Mediated Control of Particle Assembly and Maturation. J Mol Biol. 2011;408(3):541-54. PMCID PMC3075369. PubMed
9. Khayat R, Brunn N, Speir JA, Hardham JM, Ankenbauer RG, Schneemann A, Johnson JE. The 2.3-angstrom structure of porcine circovirus 2. J Virol. 2011;85(15):7856-62. PMCID PMC3147897. PubMed
10. McLellan JS, Pancera M, Carrico C, Gorman J, Julien JP, Khayat R, Louder R, Pejchal R, Sastry M, Dai K, O’Dell S, Patel N, Shahzad-ul-Hussan S, Yang Y, Zhang B, Zhou T, Zhu J, Boyington JC, Chuang GY, Diwanji D, Georgiev I, Kwon YD, Lee D, Louder MK, Moquin S, Schmidt SD, Yang ZY, Bonsignori M, Crump JA, Kapiga SH, Sam NE, Haynes BF, Burton DR, Koff WC, Walker LM, Phogat S, Wyatt R, Orwenyo J, Wang LX, Arthos J, Bewley CA, Mascola JR, Nabel GJ, Schief WR, Ward AB, Wilson IA, Kwong PD. Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9. Nature. 2011;480(7377):336-43. PMCID PMC3406929. PubMed
11. Milazzo AC, Cheng A, Moeller A, Lyumkis D, Jacovetty E, Polukas J, Ellisman MH, Xuong NH, Carragher B, Potter CS. Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy. J Struct Biol. 2011;176(3):404-8. PMCID PMC3210420. PubMed
12. Neuman BW, Kiss G, Kunding AH, Bhella D, Baksh MF, Connelly S, Droese B, Klaus JP, Makino S, Sawicki SG, Siddell SG, Stamou DG, Wilson IA, Kuhn P, Buchmeier MJ. A structural analysis of M protein in coronavirus assembly and morphology. J Struct Biol. 2011;174(1):11-22. PubMed
13. Pejchal R, Doores KJ, Walker LM, Khayat R, Huang PS, Wang SK, Stanfield RL, Julien JP, Ramos A, Crispin M, Depetris R, Katpally U, Marozsan A, Cupo A, Maloveste S, Liu Y, McBride R, Ito Y, Sanders RW, Ogohara C, Paulson JC, Feizi T, Scanlan CN, Wong CH, Moore JP, Olson WC, Ward AB, Poignard P, Schief WR, Burton DR, Wilson IA. A potent and broad neutralizing antibody recognizes and penetrates the HIV glycan shield. Science. 2011;334(6059):1097-103. PMCID PMC3280215. PubMed
14. Safinya CR, Raviv U, Needleman DJ, Zidovska A, Choi MC, Ojeda-Lopez MA, Ewert KK, Li Y, Miller HP, Quispe J, Carragher B, Potter CS, Kim MW, Feinstein SC, Wilson L. Nanoscale assembly in biological systems: from neuronal cytoskeletal proteins to curvature stabilizing lipids. Adv Mater. 2011;23(20):2260-70. PubMed
15. Southworth Daniel R, Agard David A. Client-Loading Conformation of the Hsp90 Molecular Chaperone Revealed in the Cryo-EM Structure of the Human Hsp90:Hop Complex. Molecular Cell. 2011;42(6):771-81. PMCID PMC3144320 PubMed
16. Sprecher SG, Cardona A, Hartenstein V. The Drosophila larval visual system: high-resolution analysis of a simple visual neuropil. Dev Biol. 2011;358(1):33-43. PubMed
17. Tang J, Lander GC, Olia A, Li R, Casjens S, Prevelige P, Jr., Cingolani G, Baker TS, Johnson JE. Peering down the barrel of a bacteriophage portal: the genome packaging and release valve in p22. Structure. 2011;19(4):496-502. PMCID PMC3075339. PubMed
18. Vadia S, Arnett E, Haghighat AC, Wilson-Kubalek EM, Tweten RK, Seveau S. The pore-forming toxin listeriolysin O mediates a novel entry pathway of L. monocytogenes into human hepatocytes. PLoS Pathog. 2011;7(11):e1002356. PMCID PMC3207921. PubMed
19. Wang K, Fu CY, Khayat R, Doerschuk PC, Johnson JE. In vivo virus structures: Simultaneous classification, resolution enhancement, and noise reduction in whole-cell electron tomography. J Struct Biol. 2011;174(3):425-33. PMCID PMC3091986. PubMed
20. Xu Y, Lee M, Moeller A, Song S, Yoon BY, Kim HM, Jun SY, Lee K, Ha NC. Funnel-like hexameric assembly of the periplasmic adapter protein in the tripartite multidrug efflux pump in gram-negative bacteria. J Biol Chem. 2011;286(20):17910-20. PMCID PMC3093866. PubMed
21. Xu Y, Song S, Moeller A, Kim N, Piao S, Sim SH, Kang M, Yu W, Cho HS, Chang I, Lee K, Ha NC. Functional implications of an intermeshing cogwheel-like interaction between TolC and MacA in the action of macrolide-specific efflux pump MacAB-TolC. J Biol Chem. 2011;286(15):13541-9. PMCID PMC3075700. PubMed
22. Zhao Z, Jacovetty EL, Liu Y, Yan H. Encapsulation of gold nanoparticles in a DNA origami cage. Angew Chem Int Ed Engl. 2011;50(9):2041-4. PMCID PMC3083863. PubMed
23. Zidovska A, Ewert KK, Quispe J, Carragher B, Potter CS, Safinya CR. Block Liposome and Nanotube Formation is a General Phenomenon of Two-Component Membranes Containing Multivalent Lipids. Soft Matter. 2011;7(18):8363-9. PMCID PMC3374606. PubMed

2010 (28)

1. Afonin KA, Bindewald E, Yaghoubian AJ, Voss N, Jacovetty E, Shapiro BA, Jaeger L. In vitro assembly of cubic RNA-based scaffolds designed in silico. Nat Nanotechnol. 2010;5(9):676-82. PMCID PMC2934861. PubMed
2. Banerjee D, Liu AP, Voss NR, Schmid SL, Finn MG. Multivalent display and receptor-mediated endocytosis of transferrin on virus-like particles. Chembiochem. 2010;11(9):1273-9. PubMed
3. Cardona A, Saalfeld S, Preibisch S, Schmid B, Cheng A, Pulokas J, Tomancak P, Hartenstein V. An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy. PLoS Biol. 2010;8(10). PMCID PMC2950124. PubMed
4. Fu CY, Wang K, Gan L, Lanman J, Khayat R, Young MJ, Jensen GJ, Doerschuk PC, Johnson JE. In vivo assembly of an archaeal virus studied with whole-cell electron cryotomography. Structure. 2010;18(12):1579-86. PMCID PMC3042139. PubMed
5. Hanson JA, Li Z, Deming TJ. Nonionic Block Copolypeptide Micelles Containing a Hydrophobic rac-Leucine Core. Macromolecules. 2010;43(15):6268-9. PubMed
6. Hu M, Vink M, Kim C, Derr K, Koss J, D’Amico K, Cheng A, Pulokas J, Ubarretxena-Belandia I, Stokes D. Automated electron microscopy for evaluating two-dimensional crystallization of membrane proteins. J Struct Biol. 2010. PMCID PMC2904827. PubMed
7. Huo Y, Hu Z, Zhang K, Wang L, Zhai Y, Zhou Q, Lander G, Zhu J, He Y, Pang X, Xu W, Bartlam M, Dong Z, Sun F. Crystal structure of group II chaperonin in the open state. Structure. 2010;18(10):1270-9. PMCID PMC3048791. PubMed
8. Katpally U, Voss NR, Cavazza T, Taube S, Rubin JR, Young VL, Stuckey J, Ward VK, Virgin HWt, Wobus CE, Smith TJ. High-resolution cryo-electron microscopy structures of murine norovirus 1 and rabbit hemorrhagic disease virus reveal marked flexibility in the receptor binding domains. J Virol. 2010;84(11):5836-41. PMCID PMC2830694 (availiable on 12/1/10). PubMed
9. Khayat R, Fu CY, Ortmann AC, Young MJ, Johnson JE. The architecture and chemical stability of the archaeal Sulfolobus turreted icosahedral virus. J Virol. 2010;84(18):9575-83. PMCID PMC2937605. PubMed
10. Khayat R, Lander GC, Johnson JE. An automated procedure for detecting protein folds from sub-nanometer resolution electron density. J Struct Biol. 2010;170(3):513-21. PMCID PMC2866771. PubMed
11. Kollman JM, Polka JK, Zelter A, Davis TN, Agard DA. Microtubule nucleating gamma-TuSC assembles structures with 13-fold microtubule-like symmetry. Nature. 2010;466(7308):879-82. PMCID PMC2921000. PubMed
12. Lee KK. Architecture of a nascent viral fusion pore. EMBO J. 2010;29(7):1299-311. PMCID PMC2857459. PubMed
13. Lund K, Manzo AJ, Dabby N, Michelotti N, Johnson-Buck A, Nangreave J, Taylor S, Pei R, Stojanovic MN, Walter NG, Winfree E, Yan H. Molecular robots guided by prescriptive landscapes. Nature. 2010;465(7295):206-10. PMCID PMC2907518. PubMed
14. Lyumkis D, Moeller A, Cheng A, Herold A, Hou E, Irving C, Jacovetty EL, Lau PW, Mulder AM, Pulokas J, Quispe JD, Voss NR, Potter CS, Carragher B. Automation in single-particle electron microscopy connecting the pieces. Methods Enzymol. 2010;483:291-338. PubMed
15. Matsui T, Lander GC, Khayat R, Johnson JE. Subunits fold at position-dependent rates during maturation of a eukaryotic RNA virus. Proc Natl Acad Sci U S A. 2010. PMCID PMC2922577. PubMed
16. Moyer JD, Nowak RB, Kim NE, Larkin SK, Peters LL, Hartwig J, Kuypers FA, Fowler VM. Tropomodulin 1-null mice have a mild spherocytic elliptocytosis with appearance of tropomodulin 3 in red blood cells and disruption of the membrane skeleton. Blood. 2010;116(14):2590-9. PMCID PMC2953891. PubMed
17. Mulder AM, Yoshioka C, Beck AH, Bunner AE, Milligan RA, Potter CS, Carragher B, Williamson JR. Visualizing ribosome biogenesis: parallel assembly pathways for the 30S subunit. Science. 2010;330(6004):673-7. PMCID PMC2990404. PubMed
18. Neuman BW, Kiss G, Kunding AH, Bhella D, Baksh MF, Connelly S, Droese B, Klaus JP, Makino S, Sawicki SG, Siddell SG, Stamou DG, Wilson IA, Kuhn P, Buchmeier MJ. A structural analysis of M protein in coronavirus assembly and morphology. J Struct Biol. 2010. PubMed
19. Pornillos O, Ganser-Pornillos BK, Banumathi S, Hua Y, Yeager M. Disulfide bond stabilization of the hexameric capsomer of human immunodeficiency virus. J Mol Biol. 2010;401(5):985-95. PMCID PMC3050670. PubMed
20. Sanchez JE, E. L. Jacovetty, B. Carragher, C. S. Potter, and R.E. Taurog. Introducing Students to Research: Electron Microscopy of Bacteriophages. Microscopy Today. 2010:30-3. PubMed
21. Sanz-Garcia E, Stewart AB, Belnap DM. The random-model method enables ab initio 3D reconstruction of asymmetric particles and determination of particle symmetry. J Struct Biol. 2010;171(2):216-22. PMCID PMC2885456. PubMed
22. Severcan I, Geary C, Chworos A, Voss N, Jacovetty E, Jaeger L. A polyhedron made of tRNAs. Nat Chem. 2010;2(9):772-9. PMCID PMC2928159. PubMed
23. Subramanian R, Wilson-Kubalek EM, Arthur CP, Bick MJ, Campbell EA, Darst SA, Milligan RA, Kapoor TM. Insights into antiparallel microtubule crosslinking by PRC1, a conserved nonmotor microtubule binding protein. Cell. 2010;142(3):433-43. PMCID PMC2966277. PubMed
24. Taube S, Rubin JR, Katpally U, Smith TJ, Kendall A, Stuckey JA, Wobus CE. High-resolution x-ray structure and functional analysis of the murine norovirus 1 capsid protein protruding domain. J Virol. 2010;84(11):5695-705. PMCID PMC2876589. PubMed
25. Voss NR, Lyumkis D, Cheng A, Lau PW, Mulder A, Lander GC, Brignole EJ, Fellmann D, Irving C, Jacovetty EL, Leung A, Pulokas J, Quispe JD, Winkler H, Yoshioka C, Carragher B, Potter CS. A toolbox for ab initio 3-D reconstructions in single-particle electron microscopy. J Struct Biol. 2010;169(3):389-98. PMCID PMC2826578. PubMed
26. Voss NR, Potter CS, Smith R, Carragher B. Software tools for molecular microscopy: an open-text Wikibook. Methods Enzymol. 2010;482:381-92. PubMed
27. Yoshioka C, Carragher B, Potter CS. Cryomesh: a new substrate for cryo-electron microscopy. Microsc Microanal. 2010;16(1):43-53. PMCID PMC2840046. PubMed
28. Yu Y, Smith DM, Kim HM, Rodriguez V, Goldberg AL, Cheng Y. Interactions of PAN’s C-termini with archaeal 20S proteasome and implications for the eukaryotic proteasome-ATPase interactions. Embo J. 2010;29(3):692-702. PMCID PMC2830694. PubMed

2009 (22)

1. Ambrose RL, Lander GC, Maaty WS, Bothner B, Johnson JE, Johnson KN. Drosophila A virus is an unusual RNA virus with a T=3 icosahedral core and permuted RNA-dependent RNA polymerase. J Gen Virol. 2009;90(Pt 9):2191-200. PMCID PMC2742409 PubMed
2. Brignole EJ, Smith S, Asturias FJ. Conformational flexibility of metazoan fatty acid synthase enables catalysis. Nat Struct Mol Biol. 2009;16(2):190-7. PMCID PMC2653270. PubMed
3. Chappie JS, Acharya S, Liu YW, Leonard M, Pucadyil TJ, Schmid SL. An intramolecular signaling element that modulates dynamin function in vitro and in vivo. Mol Biol Cell. 2009;20(15):3561-71. PMCID PMC2719574. PubMed
4. Elmlund D, Elmlund H. High-resolution single-particle orientation refinement based on spectrally self-adapting common lines. J Struct Biol. 2009;167(1):83-94. PubMed
5. Hudson BP, Quispe J, Lara-Gonzalez S, Kim Y, Berman HM, Arnold E, Ebright RH, Lawson CL. Three-dimensional EM structure of an intact activator-dependent transcription initiation complex. Proc Natl Acad Sci U S A. 2009;106(47):19830-5. PMCID PMC2775702. PubMed
6. Ke Y, Douglas SM, Liu M, Sharma J, Cheng A, Leung A, Liu Y, Shih WM, Yan H. Multilayer DNA origami packed on a square lattice. J Am Chem Soc. 2009;131(43):15903-8. PMCID PMC2821935. PubMed
7. Lander GC, Khayat R, Li R, Prevelige PE, Potter CS, Carragher B, Johnson JE. The P22 tail machine at subnanometer resolution reveals the architecture of an infection conduit. Structure. 2009;17(6):789-99. PMCID PMC2714705. PubMed
8. Lander GC, Stagg SM, Voss NR, Cheng A, Fellmann D, Pulokas J, Yoshioka C, Irving C, Mulder A, Lau PW, Lyumkis D, Potter CS, Carragher B. Appion: an integrated, database-driven pipeline to facilitate EM image processing. J Struct Biol. 2009;166(1):95-102. PMCID PMC2775544 PubMed
9. Lau PW, Potter CS, Carragher B, MacRae IJ. Structure of the human Dicer-TRBP complex by electron microscopy. Structure. 2009;17(10):1326-32. PMCID PMC2880462. PubMed
10. Matsui T, Lander G, Johnson JE. Characterization of large conformational changes and autoproteolysis in the maturation of a T=4 virus capsid. J Virol. 2009;83(2):1126-34. PMCID PMC2612371. PubMed
11. Mulder AM, Glavis-Bloom A, Moores CA, Wagenbach M, Carragher B, Wordeman L, Milligan RA. A new model for binding of kinesin 13 to curved microtubule protofilaments. J Cell Biol. 2009;185(1):51-7. PMCID PMC2700504. PubMed
12. Pornillos O, Ganser-Pornillos BK, Kelly BN, Hua Y, Whitby FG, Stout CD, Sundquist WI, Hill CP, Yeager M. X-ray structures of the hexameric building block of the HIV capsid. Cell. 2009;137(7):1282-92. PMCID PMC2840706. PubMed
13. Prust CJ, Doerschuk PC, Lander GC, Johnson JE. Ab initio maximum likelihood reconstruction from cryo electron microscopy images of an infectious virion of the tailed bacteriophage P22 and maximum likelihood versions of Fourier Shell Correlation appropriate for measuring resolution of spherical or cylindrical objects. J Struct Biol. 2009;167(3):185-99. PMCID PMC2803348. PubMed
14. Schafer B, Quispe J, Choudhary V, Chipuk JE, Ajero TG, Du H, Schneiter R, Kuwana T. Mitochondrial outer membrane proteins assist Bid in Bax-mediated lipidic pore formation. Mol Biol Cell. 2009;20(8):2276-85. PMCID PMC2669034. PubMed
15. Sharma J, Chhabra R, Cheng A, Brownell J, Liu Y, Yan H. Control of self-assembly of DNA tubules through integration of gold nanoparticles. Science. 2009;323(5910):112-6. PMCID PMC2893555. PubMed
16. Suloway C, Shi J, Cheng A, Pulokas J, Carragher B, Potter CS, Zheng SQ, Agard DA, Jensen GJ. Fully automated, sequential tilt-series acquisition with Leginon. J Struct Biol. 2009;167(1):11-8. PMCID PMC2724967. PubMed
17. Voss NR, Yoshioka CK, Radermacher M, Potter CS, Carragher B. DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy. J Struct Biol. 2009;166(2):205-13. PMCID PMC2768396 PubMed
18. Ward A, Mulligan S, Carragher B, Chang G, Milligan RA. Nucleotide dependent packing differences in helical crystals of the ABC transporter MsbA. J Struct Biol. 2009;165(3):169-75. PMCID PMC2703300. PubMed
19. Zidovska A, Evans HM, Ewert KK, Quispe J, Carragher B, Potter CS, Safinya CR. Liquid crystalline phases of dendritic lipid-DNA self-assemblies: lamellar, hexagonal, and DNA bundles. J Phys Chem B. 2009;113(12):3694-703. PMCID PMC2858692. PubMed
20. Zidovska A, Ewert KK, Quispe J, Carragher B, Potter CS, Safinya CR. The effect of salt and pH on block liposomes studied by cryogenic transmission electron microscopy. Biochim Biophys Acta. 2009;1788(9):1869-76. PMCID PMC2740798 PubMed
21. Zidovska A, Ewert KK, Quispe J, Carragher B, Potter CS, Safinya CR. Block liposomes from curvature-stabilizing lipids: connected nanotubes, -rods, or -spheres. Langmuir. 2009;25(5):2979-85. PMCID PMC2647992. PubMed
22. Zidovska A, Ewert KK, Quispe J, Carragher B, Potter CS, Safinya CR. Block liposomes vesicles of charged lipids with distinctly shaped nanoscale sphere-, pear-, tube-, or rod-segments. Methods Enzymol. 2009;465:111-28. PubMed

2008 (20)

1. Allred DB, Cheng A, Sarikaya M, Baneyx F, Schwartz DT. Three-Dimensional Architecture of Inorganic Nanoarrays Electrodeposited through a Surface-Layer Protein Mask. Nano Letters. 2008;8(5):1434-8. PubMed
2. Asmar-Rovira GA, Asseo-Garcia AM, Quesada O, Hanson MA, Cheng A, Nogueras C, Lasalde-Dominicci JA, Stevens RC. Biophysical and ion channel functional characterization of the Torpedo californica nicotinic acetylcholine receptor in varying detergent-lipid environments. J Membr Biol. 2008;223(1):13-26. PMCID PMC2668541. PubMed
3. Carter AP, Garbarino JE, Wilson-Kubalek EM, Shipley WE, Cho C, Milligan RA, Vale RD, Gibbons IR. Structure and functional role of dynein’s microtubule-binding domain. Science. 2008;322(5908):1691-5. PMCID PMC2663340. PubMed
4. Clare DK, Stagg S, Quispe J, Farr GW, Horwich AL, Saibil HR. Multiple states of a nucleotide-bound group 2 chaperonin. Structure. 2008;16(4):528-34. PMCID PMC2719814. PubMed
5. Frost A, Perera R, Roux A, Spasov K, Destaing O, Egelman EH, De Camilli P, Unger VM. Structural basis of membrane invagination by F-BAR domains. Cell. 2008;132(5):807-17. PMCID PMC2384079. PubMed
6. Hanson JA, Chang CB, Graves SM, Li Z, Mason TG, Deming TJ. Nanoscale double emulsions stabilized by single-component block copolypeptides. Nature. 2008;455(7209):85-8. PubMed
7. Kang S, Lander GC, Johnson JE, Prevelige PE. Development of bacteriophage p22 as a platform for molecular display: genetic and chemical modifications of the procapsid exterior surface. Chembiochem. 2008;9(4):514-8. PubMed
8. Katpally U, Wobus CE, Dryden K, Virgin HWt, Smith TJ. Structure of antibody-neutralized murine norovirus and unexpected differences from viruslike particles. J Virol. 2008;82(5):2079-88. PMCID PMC2258928. PubMed
9. Lander GC, Evilevitch A, Jeembaeva M, Potter CS, Carragher B, Johnson JE. Bacteriophage lambda stabilization by auxiliary protein gpD: timing, location, and mechanism of attachment determined by cryo-EM. Structure. 2008;16(9):1399-406. PMCID PMC2614288. PubMed
10. Littlefield KP, Ward AB, Chappie JS, Reedy MK, Bernstein SI, Milligan RA, Reedy MC. Similarities and differences between frozen-hydrated, rigor acto-S1 complexes of insect flight and chicken skeletal muscles. J Mol Biol. 2008;381(3):519-28. PMCID PMC2567842. PubMed
11. Moores CA, Milligan RA. Visualisation of a kinesin-13 motor on microtubule end mimics. J Mol Biol. 2008;377(3):647-54. PMCID PMC2396873. PubMed
12. Nemecek D, Lander GC, Johnson JE, Casjens SR, Thomas GJ, Jr. Assembly architecture and DNA binding of the bacteriophage P22 terminase small subunit. J Mol Biol. 2008;383(3):494-501. PMCID PMC2577774. PubMed
13. Neuman BW, Adair BD, Yeager M, Buchmeier MJ. Purification and electron cryomicroscopy of coronavirus particles. Methods Mol Biol. 2008;454:129-36. PubMed
14. Prasuhn DE, Jr., Kuzelka J, Strable E, Udit AK, Cho SH, Lander GC, Quispe JD, Diers JR, Bocian DF, Potter C, Carragher B, Finn MG. Polyvalent display of heme on hepatitis B virus capsid protein through coordination to hexahistidine tags. Chem Biol. 2008;15(5):513-9. PMCID PMC2715361. PubMed
15. Smith R, Carragher B. Software tools for molecular microscopy. J Struct Biol. 2008;163(3):224-8. PMCID PMC2572711. PubMed
16. Stagg SM, Lander GC, Quispe J, Voss NR, Cheng A, Bradlow H, Bradlow S, Carragher B, Potter CS. A test-bed for optimizing high-resolution single particle reconstructions. J Struct Biol. 2008;163(1):29-39. PMCID PMC2505049. PubMed
17. Stagg SM, LaPointe P, Razvi A, Gurkan C, Potter CS, Carragher B, Balch WE. Structural basis for cargo regulation of COPII coat assembly. Cell. 2008;134(3):474-84. PMCID PMC2649882. PubMed
18. Strable E, Prasuhn DE, Jr., Udit AK, Brown S, Link AJ, Ngo JT, Lander G, Quispe J, Potter CS, Carragher B, Tirrell DA, Finn MG. Unnatural amino acid incorporation into virus-like particles. Bioconjug Chem. 2008;19(4):866-75. PMCID PMC2713011. PubMed
19. Wilson-Kubalek EM, Cheeseman IM, Yoshioka C, Desai A, Milligan RA. Orientation and structure of the Ndc80 complex on the microtubule lattice. J Cell Biol. 2008;182(6):1055-61. PMCID PMC2542468. PubMed
20. Zheng H, Olia AS, Gonen M, Andrews S, Cingolani G, Gonen T. A conformational switch in bacteriophage p22 portal protein primes genome injection. Mol Cell. 2008;29(3):376-83. PubMed

2007 (17)

1. Carragher B, Potter CS, Sigworth FJ. Software tools for macromolecular microscopy. J Struct Biol. 2007;157(1):1-2. PubMed
2. Cheng A, Leung A, Fellmann D, Quispe J, Suloway C, Pulokas J, Abeyrathne PD, Lam JS, Carragher B, Potter CS. Towards automated screening of two-dimensional crystals. J Struct Biol. 2007;160(3):324-31. PMCID PMC2141647. PubMed
3. Cheng A, Yeager M. Bootstrap resampling for voxel-wise variance analysis of three-dimensional density maps derived by image analysis of two-dimensional crystals. J Struct Biol. 2007;158(1):19-32. PMCID PMC2840724. PubMed
4. Fejeran A, Palanco, J., Lander, G., Ajero, T.Jr., Carragher, C., Potter, C.S. TEM of Bacteriophages Found in Marine Sources. Microscopy Today. 2007(November 2007):28-31.
5. Ganser-Pornillos BK, Cheng A, Yeager M. Structure of full-length HIV-1 CA: a model for the mature capsid lattice. Cell. 2007;131(1):70-9. PubMed
6. Katpally U, Kakani K, Reade R, Dryden K, Rochon D, Smith TJ. Structures of T=1 and T=3 particles of cucumber necrosis virus: evidence of internal scaffolding. J Mol Biol. 2007;365(2):502-12. PubMed
7. Manuell AL, Quispe J, Mayfield SP. Structure of the chloroplast ribosome: novel domains for translation regulation. PLoS Biol. 2007;5(8):e209. PMCID PMC1939882. PubMed
8. Mizuno N, Narita A, Kon T, Sutoh K, Kikkawa M. Three-dimensional structure of cytoplasmic dynein bound to microtubules. Proc Natl Acad Sci U S A. 2007;104(52):20832-7. PMCID PMC2409227. PubMed
9. Poliakov A, van Duijn E, Lander G, Fu CY, Johnson JE, Prevelige PE, Jr., Heck AJ. Macromolecular mass spectrometry and electron microscopy as complementary tools for investigation of the heterogeneity of bacteriophage portal assemblies. J Struct Biol. 2007;157(2):371-83. PubMed
10. Quispe J, Damiano J, Mick SE, Nackashi DP, Fellmann D, Ajero TG, Carragher B, Potter CS. An improved holey carbon film for cryo-electron microscopy. Microsc Microanal. 2007;13(5):365-71. PubMed
11. Scherer EM, Zwick MB, Teyton L, Burton DR. Difficulties in eliciting broadly neutralizing anti-HIV antibodies are not explained by cardiolipin autoreactivity. AIDS. 2007;21(16):2131-9. PubMed
12. Stagg SM, LaPointe P, Balch WE. Structural design of cage and coat scaffolds that direct membrane traffic. Curr Opin Struct Biol. 2007;17(2):221-8. PubMed
13. Suzuki S, Wilson-Kubalek EM, Wert D, Tsao TS, Lee DH. The oligomeric structure of high molecular weight adiponectin. FEBS Lett. 2007;581(5):809-14. PMCID PMC1865574. PubMed
14. Taylor DW, Kelly DF, Cheng A, Taylor KA. On the freezing and identification of lipid monolayer 2-D arrays for cryoelectron microscopy. J Struct Biol. 2007;160(3):305-12. PMCID PMC2268103. PubMed
15. Uchida M, Klem MT, Allen M, Suci P, Flenniken M, Gillitzer E, Varpness Z, Liepold LO, Young M, Douglas T. Biological Containers: Protein Cages as Multifunctional Nanoplatforms. Advanced Materials. 2007;19(8):1025-42. PubMed
16. Woolford D, Hankamer B, Ericksson G. The Laplacian of Gaussian and arbitrary z-crossings approach applied to automated single particle reconstruction. J Struct Biol. 2007;159(1):122-34. PubMed
17. Yoshioka C, Pulokas J, Fellmann D, Potter CS, Milligan RA, Carragher B. Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation. J Struct Biol. 2007;159(3):335-46. PMCID PMC2043090. PubMed

2006 (14)

1. Cheeseman IM, Chappie JS, Wilson-Kubalek EM, Desai A. The conserved KMN network constitutes the core microtubule-binding site of the kinetochore. Cell. 2006;127(5):983-97. PubMed
2. Cheng A, Fellmann D, Pulokas J, Potter CS, Carragher B. Does contamination buildup limit throughput for automated cryoEM? J Struct Biol. 2006;154(3):303-11. PubMed
3. Endres NF, Yoshioka C, Milligan RA, Vale RD. A lever-arm rotation drives motility of the minus-end-directed kinesin Ncd. Nature. 2006;439(7078):875-8. PubMed
4. Fellmann D, Banez R, Carragher B, Potter CS. Temperature monitoring of an EM environment. Microscopy Today. 2006:24-8.
5. Gan L, Speir JA, Conway JF, Lander G, Cheng N, Firek BA, Hendrix RW, Duda RL, Liljas L, Johnson JE. Capsid conformational sampling in HK97 maturation visualized by X-ray crystallography and cryo-EM. Structure. 2006;14(11):1655-65. PubMed
6. Gurkan C, Stagg SM, Lapointe P, Balch WE. The COPII cage: unifying principles of vesicle coat assembly. Nat Rev Mol Cell Biol. 2006;7(10):727-38. PubMed
7. Lander GC, Tang L, Casjens SR, Gilcrease EB, Prevelige P, Poliakov A, Potter CS, Carragher B, Johnson JE. The structure of an infectious P22 virion shows the signal for headful DNA packaging. Science. 2006;312(5781):1791-5. PubMed
8. Mallick S, Agarwal, S., Kriegman, D., Belongie, S., Carragher, B., Potter, C. Vision in the Small: Reconstructing the Structure of Protein Macromolecules from Cryo-Electron Micrographs. BMVC . 2006;I(September 2006):1-6. PubMed
9. Mallick SPA, S. Kriegman, D.J. Belongie, S.J. Carragher, B., Potter, C.S. Structure and View Estimation for Tomographic Reconstruction: A Bayesian Approach. Computer Vision and Pattern Recongnition, IEEE Computer Society Conference on. 2006;2:2253-60.
10. Neuman BW, Adair BD, Yoshioka C, Quispe JD, Milligan RA, Yeager M, Buchmeier MJ. Ultrastructure of SARS-CoV, FIPV, and MHV revealed by electron cryomicroscopy. Adv Exp Med Biol. 2006;581:181-5. PubMed
11. Neuman BW, Adair BD, Yoshioka C, Quispe JD, Orca G, Kuhn P, Milligan RA, Yeager M, Buchmeier MJ. Supramolecular architecture of severe acute respiratory syndrome coronavirus revealed by electron cryomicroscopy. J Virol. 2006;80(16):7918-28. PMCID PMC1563832. PubMed
12. Pantelic RS, Rothnagel R, Huang CY, Muller D, Woolford D, Landsberg MJ, McDowall A, Pailthorpe B, Young PR, Banks J, Hankamer B, Ericksson G. The discriminative bilateral filter: an enhanced denoising filter for electron microscopy data. J Struct Biol. 2006;155(3):395-408. PubMed
13. Stagg SM, Gurkan C, Fowler DM, LaPointe P, Foss TR, Potter CS, Carragher B, Balch WE. Structure of the Sec13/31 COPII coat cage. Nature. 2006;439(7073):234-8. PubMed
14. Stagg SM, Lander GC, Pulokas J, Fellmann D, Cheng A, Quispe JD, Mallick SP, Avila RM, Carragher B, Potter CS. Automated cryoEM data acquisition and analysis of 284742 particles of GroEL. J Struct Biol. 2006;155(3):470-81. PubMed

2005 (5)

1. Dang TX, Farah SJ, Gast A, Robertson C, Carragher B, Egelman E, Wilson-Kubalek EM. Helical crystallization on lipid nanotubes: streptavidin as a model protein. J Struct Biol. 2005;150(1):90-9. PubMed
2. Kollman JM, Quispe J. The 17A structure of the 420 kDa lobster clottable protein by single particle reconstruction from cryoelectron micrographs. J Struct Biol. 2005;151(3):306-14. PubMed
3. Mallick SP, Carragher B, Potter CS, Kriegman DJ. ACE: automated CTF estimation. Ultramicroscopy. 2005;104(1):8-29. PubMed
4. Manuell AL, Yamaguchi K, Haynes PA, Milligan RA, Mayfield SP. Composition and structure of the 80S ribosome from the green alga Chlamydomonas reinhardtii: 80S ribosomes are conserved in plants and animals. J Mol Biol. 2005;351(2):266-79. PubMed
5. Suloway C, Pulokas J, Fellmann D, Cheng A, Guerra F, Quispe J, Stagg S, Potter CS, Carragher B. Automated molecular microscopy: the new Leginon system. J Struct Biol. 2005;151(1):41-60. PubMed

2004 (19)

1. Batters C, Arthur CP, Lin A, Porter J, Geeves MA, Milligan RA, Molloy JE, Coluccio LM. Myo1c is designed for the adaptation response in the inner ear. EMBO J. 2004;23(7):1433-40. PMCID PMC391074. PubMed
2. Carragher B, Fellmann D, Guerra F, Milligan RA, Mouche F, Pulokas J, Sheehan B, Quispe J, Suloway C, Zhu Y, Potter CS. Rapid routine structure determination of macromolecular assemblies using electron microscopy: current progress and further challenges. J Synchrotron Radiat. 2004;11(Pt 1):83-5. PubMed
3. Huang Z, Penczek PA. Application of template matching technique to particle detection in electron micrographs. J Struct Biol. 2004;145(1-2):29-40. PubMed
4. Kumar V, Heikkonen J, Engelhardt P, Kaski K. Robust filtering and particle picking in micrograph images towards 3D reconstruction of purified proteins with cryo-electron microscopy. J Struct Biol. 2004;145(1-2):41-51. PubMed
5. Mallick SP, Zhu Y, Kriegman D. Detecting particles in cryo-EM micrographs using learned features. J Struct Biol. 2004;145(1-2):52-62. PubMed
6. Moores CA, Perderiset M, Francis F, Chelly J, Houdusse A, Milligan RA. Mechanism of microtubule stabilization by doublecortin. Mol Cell. 2004;14(6):833-9. PubMed
7. O’Keefe MA, Turner J, Musante J, Hetherington C, Cullis AG, Carragher B, Jenkins R, Milgrim J, Milligan R, Potter CS, Allard L, Blom D, Degenhardt L, Sides W. Laboratory design for high-performance electron microscopy. Microscopy Today. 2004:8-14. PubMed
8. Potter CS, Pulokas J, Smith P, Suloway C, Carragher B. Robotic grid loading system for a transmission electron microscope. J Struct Biol. 2004;146(3):431-40. PubMed
9. Potter CS, Zhu Y, Carragher B. Automated particle selection for cryo-electron microscopy. Journal of Structural Biology. 2004;145(1-2):1-2. PubMed
10. Roger B, Al-Bassam J, Dehmelt L, Milligan RA, Halpain S. MAP2c, but not tau, binds and bundles F-actin via its microtubule binding domain. Curr Biol. 2004;14(5):363-71. PubMed
11. Roseman AM. FindEM–a fast, efficient program for automatic selection of particles from electron micrographs. J Struct Biol. 2004;145(1-2):91-9. PubMed
12. Shih WM, Quispe JD, Joyce GF. A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron. Nature. 2004;427(6975):618-21. PubMed
13. Shipley K, Hekmat-Nejad M, Turner J, Moores C, Anderson R, Milligan R, Sakowicz R, Fletterick R. Structure of a kinesin microtubule depolymerization machine. Embo J. 2004;23(7):1422-32. PubMed
14. Sigworth FJ. Classical detection theory and the cryo-EM particle selection problem. J Struct Biol. 2004;145(1-2):111-22. PubMed
15. Volkmann N. An approach to automated particle picking from electron micrographs based on reduced representation templates. J Struct Biol. 2004;145(1-2):152-6. PubMed
16. Wong HC, Chen J, Mouche F, Rouiller I, Bern M. Model-based particle picking for cryo-electron microscopy. J Struct Biol. 2004;145(1-2):157-67. PubMed
17. Yu Z, Bajaj C. Detecting circular and rectangular particles based on geometric feature detection in electron micrographs. J Struct Biol. 2004;145(1-2):168-80. PubMed
18. Zhu Y, Carragher B, Glaeser RM, Fellmann D, Bajaj C, Bern M, Mouche F, de Haas F, Hall RJ, Kriegman DJ, Ludtke SJ, Mallick SP, Penczek PA, Roseman AM, Sigworth FJ, Volkmann N, Potter CS. Automatic particle selection: results of a comparative study. J Struct Biol. 2004;145(1-2):3-14. PubMed
19. Zhu Y, Carragher B, Potter CS. Contaminant detection: improving template matching based particle selection for cryo-electron microscopy. IEEE Symposium on Biomedical Imaging, Arlington, VA April 15-18, 2004. 2004:1071-74.

2003 (6)

1. Al-Bassam J, Cui Y, Klopfenstein D, Carragher BO, Vale RD, Milligan RA. Distinct conformations of the kinesin Unc104 neck regulate a monomer to dimer motor transition. J Cell Biol. 2003;163(4):743-53. PMCID PMC2173678. PubMed
2. Carragher B, Penczek PA. Analytical methods and software tools for macromolecular microscopy. J Struct Biol. 2003;144(1-2):1-3. PubMed
3. Moores CA, Hekmat-Nejad M, Sakowicz R, Milligan RA. Regulation of KinI kinesin ATPase activity by binding to the microtubule lattice. J Cell Biol. 2003;163(5):963-71. PMCID PMC2173608. PubMed
4. Mouche F, Zhu Y, Pulokas J, Potter CS, Carragher B. Automated three-dimensional reconstruction of keyhole limpet hemocyanin type 1. J Struct Biol. 2003;144(3):301-12. PubMed
5. Ward A, Moody MF, Sheehan B, Milligan RA, Carragher B. Windex: a toolset for indexing helices. J Struct Biol. 2003;144(1-2):172-83. PubMed
6. Zhu Y, Carragher B, Mouche F, Potter CS. Automatic particle detection through efficient Hough transforms. IEEE Trans Med Imaging. 2003;22(9):1053-62. PubMed

2002 (1)

1. Fellmann D, Pulokas J, Milligan RA, Carragher B, Potter CS. A relational database for cryoEM: experience at one year and 50 000 images. J Struct Biol. 2002;137(3):273-82. PubMed